The number of software applications for microbiomics is immense, and the list here is not and never will be complete. Our aim here is to maintain a list of representative software packages that satisfy the following criteria:

  • Operational, i.e. can be installed and run more or less as advertised
  • Recently published or known to still be under active development
  • Is some combination of highly novel, widely used, and/or Canadian

Interpreting marker-gene (for example, 16S ribosomal RNA gene) data

QIIME - xxx

Metabolic pathway annotation / reconstruction

HUMAnN - xxx